Inaccessible files within FCP bundle

When you add a media location, you are granting access to that folder and everything within it (including everything within every sub-folder). You can add a bundle by adding the folder that contains the bundle.

If you want to grant access to everything on your machine in one go (including any external drives and network locations) you can just add the main hard disk (usually called "Macintosh HD") because absolutely everything else is mounted in a subfolder of that drive. This would mean that you should never have to add another media location again but it does, of course, mean that you are trusting X2Pro with access to your whole machine.

I've added several folders that were initially "inaccessible" when I went to convert but it still wants to access the FCPX bundle.

How do I give it access or export an FCP XML that does NOT require linking to the bundle?

I'm running:

OSX 10.9.4
FCPX 10.1.3

Thanks